stanford tissue microarray (tma) database software

Stanford TMA Consortium Web Portal -- Home- stanford tissue microarray (tma) database software ,TMA Home . Welcome to the web portal of the Stanford Tissue Microarray Consortium. The tissue microarray images in this portal are part of the Stanford Tissue Microarray Database. Here in the portal you can access web supplements of tissue microarray-based papers that contain a browsable GeneExplorer-based scoring cluster and image database, along with any …The Stanford Tissue Microarray DatabaseThe Stanford Tissue Microarray Database Robert J. Marinelli 1,2, *, Kelli Montgomery 3 , Chih Long Liu 4 , Nigam H. Shah 4 , Wijan Prapong 4 , Michael …



TAMEE: data management and analysis for tissue microarrays

Mar 07, 2007·Tissue microarray (TMA) technology is a high-throughput tool for simultaneous analysis of up to 1000 different tissue samples at the DNA, RNA or protein level in a single experiment. TMA technology evolved from different precursors [ 1 - 5 ] …

The Stanford Tissue Microarray Database

The Stanford Tissue Microarray Database Robert J. Marinelli 1,2, *, Kelli Montgomery 3 , Chih Long Liu 4 , Nigam H. Shah 4 , Wijan Prapong 4 , Michael …

TMAD -- The Stanford Tissue Microarray Database | HSLS

Apr 18, 2014·TMAD archives multi-wavelength fluorescence and bright-field images of tissue microarrays for scoring and analysis. As of July 2007, TMAD contained 205 161 images archiving 349 distinct probes on 1488 tissue microarray slides. Of these, 31 306 images for 68 probes on 125 slides have been released to the public.

Tissue Microarray Software -- Home - Stanford University

TMA Home . Welcome to the Stanford TMA software website and companion to "Software Tools for High-Throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays" (2002), American Journal of Pathology, Vol. 161, No. 5, pp. 1557-1565.. Here you can find out more about the programs used in the Stanford TMA data …

Predicting non-small cell lung ... - dawns.stanford.edu

Stanford Tissue Microarray (TMA) Database. We extract 9,879 quantitative image features and use regularized machine-learning methods to select the top features and to distinguish shorter-term survivors from longer-term survivors with stage I adenocarcinoma (Po0.003) or squamous cell carcinoma (P¼0.023) in the TCGA data set. We validate the ...

Tissue Microarray Software - Stanford University

Jan 17, 2007·The Stanford Tissue Microarray Consortium has published a number of TMA datasets that have made use of the TMA-Combiner. Here, one can access Stainfinder through the CaseXplorer web application to access the multiple replicate core images used to construct the combined dataset.

Ontology-based Annotation and Query of Tissue Microarray …

The Stanford Tissue Microarray Database (TMAD) provides a central repository for data from TMA’s akin to the Stanford Microarray Database (SMD) for gene expression arrays. Superficially the datasets generated from TMA and gene expression arrays appear similar in that both are matrix type data and each entry in the ...

BMC Bioinformatics BioMed Central - Stanford University

tions. The Stanford Tissue Microarray Database (TMAD) provides a central repository for data from TMA's akin to the Stanford Microarray Database (SMD) for gene expres-sion arrays. Superficially the datasets generated from TMA and gene expression arrays appear similar in that both are matrix type data and each entry in the matrix provides informa-

Tissue Microarray Software - Stanford University

Jan 17, 2007·The Stanford Tissue Microarray Consortium has published a number of TMA datasets that have made use of the TMA-Combiner. Here, one can access Stainfinder through the CaseXplorer web application to access the multiple replicate core images used to construct the combined dataset.

The Stanford Tissue Microarray Database

The Stanford Tissue Microarray Database Robert J. Marinelli 1,2, *, Kelli Montgomery 3 , Chih Long Liu 4 , Nigam H. Shah 4 , Wijan Prapong 4 , Michael …

Tissue Microarray Software -- Home - Stanford University

TMA Home . Welcome to the Stanford TMA software website and companion to "Software Tools for High-Throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays" (2002), American Journal of Pathology, Vol. 161, No. 5, pp. 1557-1565.. Here you can find out more about the programs used in the Stanford TMA data …

The Stanford Tissue Microarray Database

Stanford University pathologists, researchers and their collaborators worldwide use TMAD for designing, viewing, scoring and analyzing their tissue microarrays. The use of tissue microarrays allows hundreds of human tissue cores to be simultaneously probed by antibodies to detect protein abundance (Immunohistochemistry; IHC), or by labeled ...

BMC Bioinformatics BioMed Central - Stanford University

tions. The Stanford Tissue Microarray Database (TMAD) provides a central repository for data from TMA's akin to the Stanford Microarray Database (SMD) for gene expres-sion arrays. Superficially the datasets generated from TMA and gene expression arrays appear similar in that both are matrix type data and each entry in the matrix provides informa-

The stanford tissue microarray database - Semantic Scholar

The stanford tissue microarray database Robert J. Marinelli 1,2, *, Kelli Montgomery 3 , Chih Long Liu 4 , Nigam H. Shah 4 , Wijan Prapong 4 , Michael Nitzberg 1 , Zachariah K. Zachariah 1 , Gavin J. Sherlock 5 ,

TAMEE: data management and analysis for tissue microarrays

Mar 07, 2007·Tissue microarray (TMA) technology is a high-throughput tool for simultaneous analysis of up to 1000 different tissue samples at the DNA, RNA or protein level in a single experiment. TMA technology evolved from different precursors [ 1 - 5 ] …

Tissue Microarray Software - Stanford University

Jan 17, 2007·The Stanford Tissue Microarray Consortium has published a number of TMA datasets that have made use of the TMA-Combiner. Here, one can access Stainfinder through the CaseXplorer web application to access the multiple replicate core images used to construct the combined dataset.

Tissue Microarray Software -- Home - tma.im

TMA Home . Welcome to the Stanford TMA software website and companion to "Software Tools for High-Throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays" (2002), American Journal of Pathology, Vol. 161, No. 5, pp. 1557-1565.. Here you can find out more about the programs used in the Stanford TMA data …

Predicting non-small cell lung ... - dawns.stanford.edu

Stanford Tissue Microarray (TMA) Database. We extract 9,879 quantitative image features and use regularized machine-learning methods to select the top features and to distinguish shorter-term survivors from longer-term survivors with stage I adenocarcinoma (Po0.003) or squamous cell carcinoma (P¼0.023) in the TCGA data set. We validate the ...

The stanford tissue microarray database - Semantic Scholar

The stanford tissue microarray database Robert J. Marinelli 1,2, *, Kelli Montgomery 3 , Chih Long Liu 4 , Nigam H. Shah 4 , Wijan Prapong 4 , Michael Nitzberg 1 , Zachariah K. Zachariah 1 , Gavin J. Sherlock 5 ,

TMAD -- The Stanford Tissue Microarray Database | HSLS

Apr 18, 2014·TMAD archives multi-wavelength fluorescence and bright-field images of tissue microarrays for scoring and analysis. As of July 2007, TMAD contained 205 161 images …

Tissue Microarray Software -- Home - Stanford University

TMA Home . Welcome to the Stanford TMA software website and companion to "Software Tools for High-Throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays" (2002), American Journal of Pathology, Vol. 161, No. 5, pp. 1557-1565.. Here you can find out more about the programs used in the Stanford TMA data …

BMC Bioinformatics BioMed Central - Stanford University

tions. The Stanford Tissue Microarray Database (TMAD) provides a central repository for data from TMA's akin to the Stanford Microarray Database (SMD) for gene expres-sion arrays. Superficially the datasets generated from TMA and gene expression arrays appear similar in that both are matrix type data and each entry in the matrix provides informa-

The Stanford Tissue Microarray Database

Stanford University pathologists, researchers and their collaborators worldwide use TMAD for designing, viewing, scoring and analyzing their tissue microarrays. The use of tissue microarrays allows hundreds of human tissue cores to be simultaneously probed by antibodies to detect protein abundance (Immunohistochemistry; IHC), or by labeled ...

Stanford Tissue Microarray Database | Nucleic Acids ...

Nov 07, 2007·Per slide data such as antibody concentration, source, pre-treatment, dates and concentration of in situ probes are retained in TMAD and displayed during queries.. TISSUE MICROARRAY EXPERIMENTS. Once the tissue microarrays have been designed, constructed and stained, we use a variety of automated microscopes to permanently archive the resulting …

(PDF) The Stanford Tissue Microarray Database

In Second, TMA stands for the Stanford Tissue Microarray database, a public resource controlling annotated 205,161 images (Marinelli et al., 2008). Images at a …

TMAD -- The Stanford Tissue Microarray Database | HSLS

Apr 18, 2014·TMAD archives multi-wavelength fluorescence and bright-field images of tissue microarrays for scoring and analysis. As of July 2007, TMAD contained 205 161 images archiving 349 distinct probes on 1488 tissue microarray slides. Of these, 31 306 images for 68 probes on 125 slides have been released to the public.